Ouch, that's quite a lot of transactions. You can't just update the PJTran records, as the PJ Summary tables (PJACTSUM, PJACTROL, PJPTDSUM, PJPTDROL, etc.) are also impacted by the incorrect postings. My suggestion would be to analyze/summarize the differences between the GL and Projects by Project/Task/Acct Category, then make Project Charge entries to true up the Project Balances.
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